Core set of (multicompartmental) cell models in NeuroML2 for use in detailed model of cerebellar cortex #7
Description
Brief description
There are a number of single cell models of cerebellar neurons on OSB. A core set of these should be converted to NeuroML2 & curated for use in large scale simulations of cerebellar function
Detailed description
The following models on OSB are candidates for curation to valid NeuroML2.
| NeuroML1 | NeuroML2 | Documentation | OMV tests | ||
|---|---|---|---|---|---|
| Granule cells | |||||
| Maex & De Schutter 2008 | *** | *** | ** | ** | 3D |
| Diwakar et al. 2009 | |||||
| Solinas et al. 2010 | ** | ~ | ** | * | |
| Steuber & Saviane | * | ||||
| Golgi cells | |||||
| Maex & De Schutter 2008 | *** | *** | ** | 3D | |
| Solinas et al. 2007 | *** | * | * | 3D | |
| Vervaeke et al 2010 | *** | * | * | 3D | |
| Purkinje Cells | |||||
| De Schutter and Bower 1994 | ** | * | 3D | ||
| TODO: Masoli et al., 2015 | |||||
| Cerebellar nucleus neuron | |||||
| Steuber et al. 2011 | * | 3D | |||
| Unipolar Brush Cell | |||||
| TODO: Subramaniyam et al., 2014 |
Key:
*** Well supported in NeuroML2; extensive documentation/tests
** Partial support in NeuroML2; good documentation/tests
* Some initial support in NeuroML2; initial documentation/tests
~ Working on it...
Possible extensions
Create a set of scripts for generating provisional version of the network in 3D to test scaling
Work on this has begun here: https://github.com/OpenSourceBrain/Cerebellum3DDemo
Contact
Contact p.gleeson -at- ucl.ac.uk if you are interested in contributing to this task