From c760a8435deeedb024972b0921c54333b4ae8ebb Mon Sep 17 00:00:00 2001 From: Niall Keleher Date: Mon, 7 Jul 2025 12:55:19 -0700 Subject: [PATCH 1/5] updates to template files --- .codespell-ignore.txt | 2 + .github/pull_request_template.md | 3 +- .vscode/extensions.json | 8 +- Justfile | 12 +- pyproject.toml | 38 +- uv.lock | 1673 ++++++++++++++++++------------ 6 files changed, 1045 insertions(+), 691 deletions(-) create mode 100644 .codespell-ignore.txt diff --git a/.codespell-ignore.txt b/.codespell-ignore.txt new file mode 100644 index 0000000..ac78be1 --- /dev/null +++ b/.codespell-ignore.txt @@ -0,0 +1,2 @@ +jupyter +fillin diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md index 14c3bc4..45dd3a3 100644 --- a/.github/pull_request_template.md +++ b/.github/pull_request_template.md @@ -23,12 +23,11 @@ ## Checklist ✅ - [ ] I have run and tested my changes locally -- [ ] I have limit this PR to less than 1000 lines of code change (if not, explain why) +- [ ] I have limited this PR to less than 1000 lines of code change (if not, explain why) - [ ] I have updated/added tests to cover my changes (if applicable) - [ ] I have updated/added requirements to cover my changes (if applicable) - [ ] I have run linting and formatting on any code changes (if applicable) - [ ] I have updated the documentation (README, etc.) accordingly -- [ ] I have reviewed and resolved any merge conflict ## Reviewer Emoji Legend diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 0fafe8a..4fd64a6 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -1,10 +1,14 @@ { "recommendations": [ "ms-python.python", - "charliermarsh.ruff", "ms-toolsai.jupyter", + "ms-python.vscode-python-envs", + "charliermarsh.ruff", "github.vscode-pull-request-github", "davidanson.vscode-markdownlint", - "donjayamanne.python-environment-manager" + "quarto.quarto", + "skellock.just", + "yzhang.markdown-all-in-one", + "redhat.vscode-yaml", ] } diff --git a/Justfile b/Justfile index cd7d0fa..07f9332 100644 --- a/Justfile +++ b/Justfile @@ -14,7 +14,6 @@ system-info: @echo "CPU architecture: {{ arch() }}" @echo "Operating system type: {{ os_family() }}" @echo "Operating system: {{ os() }}" - @echo "Home directory: {{ home_directory() }}" # Clean venv clean: @@ -32,7 +31,7 @@ update-reqs: venv: uv sync uv tool install pre-commit - pre-commit install + uv run pre-commit install activate-venv: uv shell @@ -85,15 +84,14 @@ pre-commit-run: [windows] pre-install: - winget install Casey.Just astral-sh.uv GitHub.cli Posit.Quarto + winget install Casey.Just astral-sh.uv GitHub.cli Posit.Quarto OpenJS.NodeJS + npm install -g markdownlint-cli [linux] pre-install: - brew install just uv gh - curl -sfL https://github.com/quarto-dev/quarto-cli/releases/download/v1.5.54/quarto-1.5.54-linux-amd64.deb | sudo apt install ./quarto-1.5.54-linux-amd64.deb - rm quarto-1.5.54-linux-amd64.deb + brew install just uv gh markdownlint-cli [macos] pre-install: - brew install just uv gh + brew install just uv gh markdownlint-cli brew install --cask quarto diff --git a/pyproject.toml b/pyproject.toml index fc4559e..a50cace 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,27 +1,32 @@ [project] -name = "dms-dashboard" +name = "project-name" version = "0.1.0" -description = "IPA Data Management System Dashboard." +description = "Project description" readme = "README.md" requires-python = ">=3.12" dependencies = [ - "mdformat>=0.7.17", - "mdformat-config>=0.1.3", - "mdformat-frontmatter>=2.0.8", - "mdformat-gfm>=0.3.6", - "mdformat-pyproject>=0.0.1", - "ruff>=0.6.4", + "duckdb>=1.1.3", + "great-tables>=0.15.0", "ipykernel>=6.29.5", - "jupyterlab>=4.2.5", - "sqlfluff>=3.1.1", + "jupyter>=1.1.1", + "jupytext>=1.17.2", + "pandas>=2.2.3", + "polars>=1.17.1", + "seaborn>=0.13.2", ] +[tool.uv] +dev-dependencies = [ + "pre-commit>=4.2.0", + "ruff>=0.7.4", +] + [tool.ruff] line-length = 88 fix = true -# Assume Python 3.11 -target-version = "py311" +# 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astral-sh/setup-uv@v6 + with: + python-version: '3.12' + enable-cache: true + cache-dependency-glob: "uv.lock" + - name: Sync uv + run: uv sync --locked --all-extras --dev - uses: pre-commit/action@v3.0.1 From bb2b95abe779b529162b4305badedafacf18f276 Mon Sep 17 00:00:00 2001 From: Niall Keleher Date: Mon, 7 Jul 2025 13:12:43 -0700 Subject: [PATCH 4/5] add codespell --- .pre-commit-config.yaml | 32 ++++++++++++++++---------------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 2b772c3..53f70ab 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,38 +1,38 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.6.0 + rev: v5.0.0 hooks: - id: check-yaml - stages: [commit] + stages: [pre-commit] - id: check-json - stages: [commit] + stages: [pre-commit] exclude: ^\.devcontainer/devcontainer\.json$ - id: check-toml - stages: [commit] + stages: [pre-commit] - id: check-merge-conflict - stages: [commit] + stages: [pre-commit] - repo: https://github.com/abravalheri/validate-pyproject - rev: v0.19 + rev: v0.24.1 hooks: - id: validate-pyproject + - repo: https://github.com/codespell-project/codespell + rev: v2.4.1 + hooks: + - id: codespell + - repo: https://github.com/igorshubovych/markdownlint-cli - rev: v0.41.0 + rev: v0.45.0 hooks: - id: markdownlint-fix - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.6.4 + rev: v0.12.2 hooks: - - id: ruff-format - types_or: [python, pyi, jupyter] - - id: ruff + - id: ruff-check args: [--fix, --exit-non-zero-on-fix] types_or: [python, pyi, jupyter] require_serial: true - - - repo: https://github.com/crate-ci/typos - rev: v1.24.5 - hooks: - - id: typos + - id: ruff-format + types_or: [python, pyi, jupyter] From b4f66916713f3dd3fe6558e7ccbfdbd88f68e06d Mon Sep 17 00:00:00 2001 From: Niall Keleher Date: Mon, 7 Jul 2025 13:16:47 -0700 Subject: [PATCH 5/5] add codespell --- .codespell-ignore.txt | 2 -- pyproject.toml | 5 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