From 794f2217ca86c8ab08bee24a1ee4fa0f04aac01a Mon Sep 17 00:00:00 2001 From: Francesco Mazzaschi Date: Tue, 11 Nov 2025 14:31:12 +0100 Subject: [PATCH 1/4] ml tutorial: update running script --- Tutorials/ML/config.json | 1452 ++++++++++++++++++++++++++ Tutorials/ML/run_applyMlSelection.sh | 21 +- 2 files changed, 1466 insertions(+), 7 deletions(-) create mode 100644 Tutorials/ML/config.json diff --git a/Tutorials/ML/config.json b/Tutorials/ML/config.json new file mode 100644 index 00000000000..88169d33b99 --- /dev/null +++ b/Tutorials/ML/config.json @@ -0,0 +1,1452 @@ +{ + "apply-ml-selection": { + "ptCandMax": "36", + "nClassesMl": "3", + "cutDirMl": { + "values": [ + 1, + 2, + 2 + ] + }, + "loadModelsFromCCDB": "1", + "cutsMl": { + "values": [ + [ + 0.5, + 0.5, + 0.5 + ] + ] + }, + "ccdbUrl": "http://alice-ccdb.cern.ch", + "timestampCCDB": "-1", + "ptCandMin": "1", + "onnxFileNames": { + "values": [ + "model_onnx.onnx" + ] + }, + "yCandRecoMax": "0.8", + "binsPtMl": { + "values": [ 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"pidTPC.networkSetNumThreads": "0", + "pidTPC.pid-full-pr": "-1", + "pidTPC.pid-tiny-ka": "-1", + "pidTPC.networkBetaGammaCutoff": "0.45", + "pidTPC.devicesRequiringTPCOnlyPID": { + "values": [ + "photon-conversion-builder" + ] + }, + "pidTPC.useNetworkCorrection": "1", + "ccdburl": "http://alice-ccdb.cern.ch", + "pidTPC.savedEdxsCorrected": "-1", + "processTracksMCIU": "1" + } +} + \ No newline at end of file diff --git a/Tutorials/ML/run_applyMlSelection.sh b/Tutorials/ML/run_applyMlSelection.sh index 8df339186ff..b160bdc67be 100755 --- a/Tutorials/ML/run_applyMlSelection.sh +++ b/Tutorials/ML/run_applyMlSelection.sh @@ -1,6 +1,6 @@ #!/bin/bash -# Copyright 2019-2025 CERN and copyright holders of ALICE O2. +# Copyright 2019-2023 CERN and copyright holders of ALICE O2. # See https://alice-o2.web.cern.ch/copyright for details of the copyright holders. # All rights not expressly granted are reserved. # @@ -26,21 +26,28 @@ LOGFILE="stdout.log" DIR_THIS="$(dirname "$(realpath "$0")")" # O2 configuration file (in the same directory) -JSON="$DIR_THIS/dpl-config_applyMlSelection.json" +JSON="$DIR_THIS/config.json" # command line options of O2 workflows -OPTIONS="-b --configuration json://$JSON --aod-memory-rate-limit 2000000000 --shm-segment-size 16000000000 --resources-monitoring 2 --min-failure-level error" +OPTIONS="-b --configuration json://$JSON --shm-segment-size 16000000000" +AOD_PATH="AO2D_MC_Ds.root" # execute the mini task workflow and its dependencies # shellcheck disable=SC2086 # Ignore unquoted options. o2-analysistutorial-apply-ml-selection $OPTIONS | \ +o2-analysis-pid-tof-full $OPTIONS | \ +o2-analysis-ft0-corrected-table $OPTIONS | \ o2-analysis-hf-candidate-creator-3prong $OPTIONS | \ +o2-analysis-hf-pid-creator $OPTIONS | \ o2-analysis-hf-track-index-skim-creator $OPTIONS | \ +o2-analysis-pid-tof-base $OPTIONS | \ +o2-analysis-trackselection $OPTIONS | \ +o2-analysis-mccollision-converter $OPTIONS | \ o2-analysis-track-to-collision-associator $OPTIONS | \ -o2-analysis-timestamp $OPTIONS | \ -o2-analysis-track-propagation $OPTIONS | \ -o2-analysis-event-selection $OPTIONS | \ -o2-analysis-trackselection $OPTIONS \ +o2-analysis-tracks-extra-v002-converter $OPTIONS | \ +o2-analysis-event-selection-service $OPTIONS | \ +o2-analysis-propagationservice $OPTIONS | \ +o2-analysis-pid-tpc-service $OPTIONS --aod-file $AOD_PATH \ > "$LOGFILE" 2>&1 # report status From 89732732054716e5ed44a404799a68ed74e1848c Mon Sep 17 00:00:00 2001 From: Francesco Mazzaschi Date: Tue, 11 Nov 2025 14:32:04 +0100 Subject: [PATCH 2/4] delete old config --- Tutorials/ML/dpl-config_applyMlSelection.json | 427 ------------------ 1 file changed, 427 deletions(-) delete mode 100644 Tutorials/ML/dpl-config_applyMlSelection.json diff --git a/Tutorials/ML/dpl-config_applyMlSelection.json b/Tutorials/ML/dpl-config_applyMlSelection.json deleted file mode 100644 index 592d2973bf0..00000000000 --- a/Tutorials/ML/dpl-config_applyMlSelection.json +++ /dev/null @@ -1,427 +0,0 @@ -{ - "apply-ml-selection": { - "ptCandMin": "1", - "ptCandMax": "36", - "yCandRecoMax": "0.8", - "binsPtMl": { - "values": [ - "1", - "36" - ] - }, - "cutDirMl": { - "values": [ - "1", - "2", - "2" - ] - }, - "cutsMl": { - "labels_rows": [ - "pT bin 0" - ], - "labels_cols": [ - "score prompt", - "score non-prompt", - "score bkg" - ], - "values": [ - [ - "0.5", - "0.5", - "0.5" - ] - ] - }, - "nClassesMl": "3", - "onnxFileNames": { - "values": [ - "model_onnx.onnx" - ] - }, - "loadModelsFromCCDB": "false", - "ccdbUrl": "http://alice-ccdb.cern.ch", - "modelPathsCCDB": { - "values": [ - "Users\/c\/ciacco\/O2AT4\/MlInference" - ] - }, - "timestampCCDB": "-1" - }, - "internal-dpl-aod-reader": { - "aod-file-private": "AO2D_MC_Ds.root", - "time-limit": "0", - "orbit-offset-enumeration": "0", - "orbit-multiplier-enumeration": "0", - "start-value-enumeration": "0", - "end-value-enumeration": "-1", - "step-value-enumeration": "1", - "aod-parent-access-level": "1" - }, - 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changed, 10 insertions(+), 9 deletions(-) diff --git a/PWGLF/DataModel/LFHypernucleiTables.h b/PWGLF/DataModel/LFHypernucleiTables.h index 35a1f7ba51c..ca389cf928b 100644 --- a/PWGLF/DataModel/LFHypernucleiTables.h +++ b/PWGLF/DataModel/LFHypernucleiTables.h @@ -36,6 +36,7 @@ DECLARE_SOA_COLUMN(PsiTPC, psiTPC, float); // Psi with TPC estim DECLARE_SOA_COLUMN(MultTPC, multTPC, float); // Multiplicity with TPC estimator DECLARE_SOA_COLUMN(CollisionId, collisionId, int64_t); // CollisionID +DECLARE_SOA_COLUMN(RunNumber, runNumber, int32_t); // Run number DECLARE_SOA_COLUMN(IsMatter, isMatter, bool); // bool: true for matter DECLARE_SOA_COLUMN(PtHe3, ptHe3, float); // Pt of the He daughter DECLARE_SOA_COLUMN(PhiHe3, phiHe3, float); // Phi of the He daughter @@ -93,7 +94,7 @@ DECLARE_SOA_TABLE(DataHypCands, "AOD", "HYPCANDS", hyperrec::CentralityFT0A, hyperrec::CentralityFT0C, hyperrec::CentralityFT0M, hyperrec::XPrimVtx, hyperrec::YPrimVtx, hyperrec::ZPrimVtx, - hyperrec::IsMatter, + hyperrec::RunNumber, hyperrec::IsMatter, hyperrec::PtHe3, hyperrec::PhiHe3, hyperrec::EtaHe3, hyperrec::PtPi, hyperrec::PhiPi, hyperrec::EtaPi, hyperrec::XDecVtx, hyperrec::YDecVtx, hyperrec::ZDecVtx, @@ -112,7 +113,7 @@ DECLARE_SOA_TABLE(DataHypCandsFlow, "AOD", "HYPCANDSFLOW", hyperrec::PsiTPC, hyperrec::MultTPC, hyperrec::XPrimVtx, hyperrec::YPrimVtx, hyperrec::ZPrimVtx, - hyperrec::IsMatter, + hyperrec::RunNumber, hyperrec::IsMatter, hyperrec::PtHe3, hyperrec::PhiHe3, hyperrec::EtaHe3, hyperrec::PtPi, hyperrec::PhiPi, hyperrec::EtaPi, hyperrec::XDecVtx, hyperrec::YDecVtx, hyperrec::ZDecVtx, @@ -128,7 +129,7 @@ DECLARE_SOA_TABLE(MCHypCands, "AOD", "MCHYPCANDS", hyperrec::CentralityFT0A, hyperrec::CentralityFT0C, hyperrec::CentralityFT0M, hyperrec::XPrimVtx, hyperrec::YPrimVtx, hyperrec::ZPrimVtx, - hyperrec::IsMatter, + hyperrec::RunNumber, hyperrec::IsMatter, hyperrec::PtHe3, hyperrec::PhiHe3, hyperrec::EtaHe3, hyperrec::PtPi, hyperrec::PhiPi, hyperrec::EtaPi, hyperrec::XDecVtx, hyperrec::YDecVtx, hyperrec::ZDecVtx, @@ -157,7 +158,7 @@ DECLARE_SOA_TABLE(DataHypCandsWColl, "AOD", "HYPCANDSWCOLL", hyperrec::CollisionId, hyperrec::CentralityFT0A, hyperrec::CentralityFT0C, hyperrec::CentralityFT0M, hyperrec::XPrimVtx, hyperrec::YPrimVtx, hyperrec::ZPrimVtx, - hyperrec::IsMatter, + hyperrec::RunNumber, hyperrec::IsMatter, hyperrec::PtHe3, hyperrec::PhiHe3, hyperrec::EtaHe3, hyperrec::PtPi, hyperrec::PhiPi, hyperrec::EtaPi, hyperrec::XDecVtx, hyperrec::YDecVtx, hyperrec::ZDecVtx, diff --git a/PWGLF/TableProducer/Nuspex/hyperRecoTask.cxx b/PWGLF/TableProducer/Nuspex/hyperRecoTask.cxx index ba4b925f7d9..eaf10bb9bbd 100644 --- a/PWGLF/TableProducer/Nuspex/hyperRecoTask.cxx +++ b/PWGLF/TableProducer/Nuspex/hyperRecoTask.cxx @@ -687,7 +687,7 @@ struct hyperRecoTask { float trackedHypClSize = !trackedClSize.empty() ? trackedClSize[hypCand.v0ID] : 0; outputDataTable(collision.centFT0A(), collision.centFT0C(), collision.centFT0M(), collision.posX(), collision.posY(), collision.posZ(), - hypCand.isMatter, + mRunNumber, hypCand.isMatter, hypCand.recoPtHe3(), hypCand.recoPhiHe3(), hypCand.recoEtaHe3(), hypCand.recoPtPi(), hypCand.recoPhiPi(), hypCand.recoEtaPi(), hypCand.decVtx[0], hypCand.decVtx[1], hypCand.decVtx[2], @@ -722,7 +722,7 @@ struct hyperRecoTask { collision.psiFT0C(), collision.multFT0C(), collision.qFT0C(), collision.psiTPC(), collision.multTPC(), collision.posX(), collision.posY(), collision.posZ(), - hypCand.isMatter, + mRunNumber, hypCand.isMatter, hypCand.recoPtHe3(), hypCand.recoPhiHe3(), hypCand.recoEtaHe3(), hypCand.recoPtPi(), hypCand.recoPhiPi(), hypCand.recoEtaPi(), hypCand.decVtx[0], hypCand.decVtx[1], hypCand.decVtx[2], @@ -750,7 +750,7 @@ struct hyperRecoTask { float trackedHypClSize = !trackedClSize.empty() ? trackedClSize[hypCand.v0ID] : 0; outputDataTableWithCollID(hypCand.collisionID, collision.centFT0A(), collision.centFT0C(), collision.centFT0M(), collision.posX(), collision.posY(), collision.posZ(), - hypCand.isMatter, + mRunNumber, hypCand.isMatter, hypCand.recoPtHe3(), hypCand.recoPhiHe3(), hypCand.recoEtaHe3(), hypCand.recoPtPi(), hypCand.recoPhiPi(), hypCand.recoEtaPi(), hypCand.decVtx[0], hypCand.decVtx[1], hypCand.decVtx[2], @@ -786,7 +786,7 @@ struct hyperRecoTask { float trackedHypClSize = !trackedClSize.empty() ? trackedClSize[hypCand.v0ID] : 0; outputMCTable(collision.centFT0A(), collision.centFT0C(), collision.centFT0M(), collision.posX(), collision.posY(), collision.posZ(), - hypCand.isMatter, + mRunNumber, hypCand.isMatter, hypCand.recoPtHe3(), hypCand.recoPhiHe3(), hypCand.recoEtaHe3(), hypCand.recoPtPi(), hypCand.recoPhiPi(), hypCand.recoEtaPi(), hypCand.decVtx[0], hypCand.decVtx[1], hypCand.decVtx[2], @@ -861,7 +861,7 @@ struct hyperRecoTask { } outputMCTable(centFT0A, centFT0C, centFT0M, - -1, -1, -1, + mRunNumber, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, From 9be42644549797dcbb4cd40f8d67b9e05dee6905 Mon Sep 17 00:00:00 2001 From: ALICE Action Bot Date: Wed, 12 Nov 2025 16:23:15 +0000 Subject: [PATCH 4/4] Please consider the following formatting changes --- Tutorials/ML/config.json | 2819 +++++++++++++++++++------------------- 1 file changed, 1409 insertions(+), 1410 deletions(-) diff --git a/Tutorials/ML/config.json b/Tutorials/ML/config.json index 88169d33b99..783c9185cc9 100644 --- a/Tutorials/ML/config.json +++ b/Tutorials/ML/config.json @@ -1,1452 +1,1451 @@ { "apply-ml-selection": { - "ptCandMax": "36", - "nClassesMl": "3", - "cutDirMl": { - "values": [ - 1, - 2, - 2 - ] - }, - "loadModelsFromCCDB": "1", - "cutsMl": { - "values": [ - [ - 0.5, - 0.5, - 0.5 - ] - ] - }, - "ccdbUrl": "http://alice-ccdb.cern.ch", - "timestampCCDB": "-1", - "ptCandMin": "1", - "onnxFileNames": { - "values": [ - "model_onnx.onnx" - ] - }, - "yCandRecoMax": "0.8", - "binsPtMl": { - "values": [ - 1, - 36 - ] - }, - "modelPathsCCDB": { - "values": [ - "Users/c/ciacco/O2AT4/MlInference" - ] - } + "ptCandMax": "36", + "nClassesMl": "3", + "cutDirMl": { + "values": [ + 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