diff --git a/README.rst b/README.rst index 67b5d1b..0d926c5 100644 --- a/README.rst +++ b/README.rst @@ -25,22 +25,22 @@ object and acts as a reader:: This produces a great deal of information, but it is conveniently accessed. -The attributes of a Record are the 8 fixed fields from the VCF spec:: +The attributes of a Record are the 8 fixed fields from the VCF spec: - * ``Record.CHROM`` - * ``Record.POS`` - * ``Record.ID`` - * ``Record.REF`` - * ``Record.ALT`` - * ``Record.QUAL`` - * ``Record.FILTER`` - * ``Record.INFO`` +* ``Record.CHROM`` +* ``Record.POS`` +* ``Record.ID`` +* ``Record.REF`` +* ``Record.ALT`` +* ``Record.QUAL`` +* ``Record.FILTER`` +* ``Record.INFO`` plus attributes to handle genotype information: - * ``Record.FORMAT`` - * ``Record.samples`` - * ``Record.genotype`` +* ``Record.FORMAT`` +* ``Record.samples`` +* ``Record.genotype`` ``samples`` and ``genotype``, not being the title of any column, are left lowercase. The format of the fixed fields is from the spec. Comma-separated lists in the VCF are @@ -115,11 +115,11 @@ There are also a number of methods:: Metadata regarding the VCF file itself can be investigated through the following attributes: - * ``Reader.metadata`` - * ``Reader.infos`` - * ``Reader.filters`` - * ``Reader.formats`` - * ``Reader.samples`` +* ``Reader.metadata`` +* ``Reader.infos`` +* ``Reader.filters`` +* ``Reader.formats`` +* ``Reader.samples`` For example::