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CI: Split tests in config, for timing steps
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+91
-31
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5 files changed

+91
-31
lines changed

‎.circleci/config.yml‎

Lines changed: 61 additions & 17 deletions
Original file line numberDiff line numberDiff line change
@@ -120,14 +120,21 @@ jobs:
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export DATA_NIPYPE_FSL_FEEDS="${OSF_NIPYPE_URL}/57f473066c613b01f113e7af"
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curl -sSL --retry 5 --connect-timeout 15 "$DATA_NIPYPE_FSL_FEEDS" | tar xz
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- run:
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name: Run tests
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no_output_timeout: 2h
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name: Prepare working directory
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environment:
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WORKDIR: /home/circleci/work
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command: |
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mkdir -p "$WORKDIR"
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chmod -R 777 "$WORKDIR"
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bash /home/circleci/nipype/.circleci/pytests.sh
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- run:
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name: Run pytests (py36)
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command: bash /home/circleci/nipype/.circleci/test_py3_pytest.sh
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- run:
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name: Run pytests (py27)
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command: bash /home/circleci/nipype/.circleci/test_py2_pytest.sh
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- run:
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name: Build docs (py36)
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command: bash /home/circleci/nipype/.circleci/test_py3_docs.sh
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- store_artifacts:
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path: /home/circleci/work/tests
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@@ -201,17 +208,36 @@ jobs:
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export DATA_NIPYPE_FSL_FEEDS="${OSF_NIPYPE_URL}/57f473066c613b01f113e7af"
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curl -sSL --retry 5 --connect-timeout 15 "$DATA_NIPYPE_FSL_FEEDS" | tar xz
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- run:
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name: Run tests
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no_output_timeout: 2h
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name: Prepare working directory
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environment:
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WORKDIR: /home/circleci/work
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command: |
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mkdir -p "$WORKDIR"
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chmod -R 777 "$WORKDIR"
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bash /home/circleci/nipype/.circleci/test_py3_fmri_fsl_feeds_linear_l1.sh
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bash /home/circleci/nipype/.circleci/test_py3_fmri_fsl_reuse_linear_l1.sh
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bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_linear_3d.sh
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bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_linear_4d.sh
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- run:
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name: Run FSL FEEDS pipeline (py36)
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no_output_timeout: 40m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_fsl_feeds_linear_l1.sh
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- run:
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name: Run FSL reuse pipeline (py36)
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no_output_timeout: 40m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_fsl_reuse_linear_l1.sh
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- run:
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name: Run SPM test workflow - 3D inputs (py36)
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no_output_timeout: 40m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_linear_3d.sh
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- run:
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name: Run SPM test workflow - 4D inputs (py36)
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no_output_timeout: 40m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_linear_4d.sh
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- store_artifacts:
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path: /home/circleci/work/tests
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@@ -285,15 +311,24 @@ jobs:
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export DATA_NIPYPE_FSL_FEEDS="${OSF_NIPYPE_URL}/57f473066c613b01f113e7af"
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curl -sSL --retry 5 --connect-timeout 15 "$DATA_NIPYPE_FSL_FEEDS" | tar xz
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- run:
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name: Run tests
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no_output_timeout: 2h
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name: Prepare working directory
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environment:
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WORKDIR: /home/circleci/work
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command: |
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mkdir -p "$WORKDIR"
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chmod -R 777 "$WORKDIR"
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bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_dartel_multiproc_l1.sh
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bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_dartel_multiproc_l2.sh
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- run:
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name: Run SPM DARTEL Level 1 pipeline (py36)
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no_output_timeout: 1h
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_dartel_multiproc_l1.sh
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- run:
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name: Run SPM DARTEL Level 2 pipeline (py36)
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no_output_timeout: 30m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_dartel_multiproc_l2.sh
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- store_artifacts:
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path: /home/circleci/work/tests
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@@ -382,15 +417,24 @@ jobs:
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export DATA_NIPYPE_FSL_FEEDS="${OSF_NIPYPE_URL}/57f473066c613b01f113e7af"
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curl -sSL --retry 5 --connect-timeout 15 "$DATA_NIPYPE_FSL_FEEDS" | tar xz
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- run:
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name: Run tests
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no_output_timeout: 2h
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name: Prepare working directory
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environment:
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WORKDIR: /home/circleci/work
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command: |
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mkdir -p "$WORKDIR"
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chmod -R 777 "$WORKDIR"
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bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_nested_multiproc_l1.sh
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bash /home/circleci/nipype/.circleci/test_py2_fmri_spm_nested_multiproc_l2.sh
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- run:
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name: Run SPM Nested Level 1 pipeline (py36)
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no_output_timeout: 1h
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py3_fmri_spm_nested_multiproc_l1.sh
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- run:
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name: Run SPM Nested Level 2 pipeline (py27)
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no_output_timeout: 30m
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environment:
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WORKDIR: /home/circleci/work
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command: bash /home/circleci/nipype/.circleci/test_py2_fmri_spm_nested_multiproc_l2.sh
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- store_artifacts:
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path: /home/circleci/work/tests
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- run:

‎.circleci/pytests.sh‎

Lines changed: 0 additions & 14 deletions
This file was deleted.

‎.circleci/test_py2_pytest.sh‎

Lines changed: 10 additions & 0 deletions
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@@ -0,0 +1,10 @@
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#!/bin/bash
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DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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. $DIR/test_init.sh
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docker run --rm=false -t -v $WORKDIR:/work -v $HOME/examples:/data/examples:ro -w /work -e CI_SKIP_TEST=1 -e NIPYPE_RESOURCE_MONITOR=1 -e FSL_COURSE_DATA="/data/examples/nipype-fsl_course_data" "${DOCKER_IMAGE}:py27" /usr/bin/run_pytests.sh
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exitcode=$?
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. $DIR/test_complete.sh

‎.circleci/test_py3_docs.sh‎

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#!/bin/bash
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DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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. $DIR/test_init.sh
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7+
docker run --rm=false -t -v $WORKDIR:/work -v $HOME/examples:/data/examples:ro -w /src/nipype/doc "${DOCKER_IMAGE}:py36" /usr/bin/run_builddocs.sh
8+
exitcode=$?
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. $DIR/test_complete.sh

‎.circleci/test_py3_pytest.sh‎

Lines changed: 10 additions & 0 deletions
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@@ -0,0 +1,10 @@
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#!/bin/bash
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DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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. $DIR/test_init.sh
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7+
docker run --rm=false -t -v $WORKDIR:/work -v $HOME/examples:/data/examples:ro -w /work -e CI_SKIP_TEST=1 -e NIPYPE_RESOURCE_MONITOR=1 -e FSL_COURSE_DATA="/data/examples/nipype-fsl_course_data" "${DOCKER_IMAGE}:py36" /usr/bin/run_pytests.sh
8+
exitcode=$?
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. $DIR/test_complete.sh

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