BF: Update ctab file locations to under label/

Mislabeled locations caused some parts of ReconAll to be re-done
unnecessarily

Author: effigies

nipype/interfaces/freesurfer/preprocess.py

@@ -746,14 +746,14 @@ class ReconAll(CommandLine):
                            'label/rh.aparc.a2009s.annot'], []),
             ('parcstats2', ['stats/lh.aparc.a2009s.stats',
                             'stats/rh.aparc.a2009s.stats',
-                            'stats/aparc.annot.a2009s.ctab'], []),
+                            'label/aparc.annot.a2009s.ctab'], []),
             ('cortribbon', ['mri/lh.ribbon.mgz', 'mri/rh.ribbon.mgz',
                             'mri/ribbon.mgz'], []),
             ('segstats', ['stats/aseg.stats'], []),
             ('aparc2aseg', ['mri/aparc+aseg.mgz',
                             'mri/aparc.a2009s+aseg.mgz'], []),
             ('wmparc', ['mri/wmparc.mgz', 'stats/wmparc.stats'], []),
-            ('balabels', ['BA.ctab', 'BA.thresh.ctab'], []),
+            ('balabels', ['label/BA.ctab', 'label/BA.thresh.ctab'], []),
             ('label-exvivo-ec', ['label/lh.entorhinal_exvivo.label',
                                  'label/rh.entorhinal_exvivo.label'], []),
             ]
@@ -808,17 +808,17 @@ class ReconAll(CommandLine):
             ('cortribbon', ['mri/lh.ribbon.mgz', 'mri/rh.ribbon.mgz',
                             'mri/ribbon.mgz'], []),
             ('parcstats', ['stats/lh.aparc.astats', 'stats/rh.aparc.stats',
-                           'stats/aparc.annot.ctab'], []),
+                           'label/aparc.annot.ctab'], []),
             ('cortparc2', ['label/lh.aparc.a2009s.annot',
                            'label/rh.aparc.a2009s.annot'], []),
             ('parcstats2', ['stats/lh.aparc.a2009s.stats',
                             'stats/rh.aparc.a2009s.stats',
-                            'stats/aparc.annot.a2009s.ctab'], []),
+                            'label/aparc.annot.a2009s.ctab'], []),
             ('cortparc3', ['label/lh.aparc.DKTatlas.annot',
                            'label/rh.aparc.DKTatlas.annot'], []),
             ('parcstats3', ['stats/lh.aparc.DKTatlas.stats',
                             'stats/rh.aparc.DKTatlas.stats',
-                            'stats/aparc.annot.DKTatlas.ctab'], []),
+                            'label/aparc.annot.DKTatlas.ctab'], []),
             ('pctsurfcon', ['surf/lh.w-g.pct.mgh', 'surf/rh.w-g.pct.mgh'], []),
             ('hyporelabel', ['mri/aseg.presurf.hypos.mgz'], []),
             ('aparc2aseg', ['mri/aparc+aseg.mgz',
@@ -827,7 +827,10 @@ class ReconAll(CommandLine):
             ('apas2aseg', ['mri/aseg.mgz'], ['mri/aparc+aseg.mgz']),
             ('segstats', ['stats/aseg.stats'], []),
             ('wmparc', ['mri/wmparc.mgz', 'stats/wmparc.stats'], []),
-            ('balabels', ['BA.ctab', 'BA.thresh.ctab',
+            # Note that this is a very incomplete list; however the ctab
+            # files are last to be touched, so this should be reasonable
+            ('balabels', ['label/BA_exvivo.ctab',
+                          'label/BA_exvivo.thresh.ctab',
                           'label/lh.entorhinal_exvivo.label',
                           'label/rh.entorhinal_exvivo.label'], []),
             ]