fix fmri_spm_nested, teardown script #1538

Author: oesteban

circle.yml

@@ -29,11 +29,7 @@ test:
     - docker run -i -v /etc/localtime:/etc/localtime:ro -v ~/scratch:/scratch -w /scratch --entrypoint="/usr/bin/run_nosetests.sh" nipype/testbench :
         timeout: 2600
   post:
-    - mkdir -p ${CIRCLE_TEST_REPORTS}/nose
-    - sudo mv ~/scratch/nosetests.xml ${CIRCLE_TEST_REPORTS}/nose/${CIRCLE_PROJECT_REPONAME}.xml
-    - mkdir -p ~/docs
-    - sudo mv ~/scratch/docs/* ~/docs/
-    - sudo mv ~/scratch/builddocs.log ~/docs/log.txt
+    - bash docker/circleci/teardown.sh
 
 general:
   artifacts:

docker/circleci/run_builddocs.sh

@@ -5,8 +5,8 @@ done
 source activate nipypetests-2.7
 
 mkdir -p /scratch/docs
-set -o pipefail && cd /root/src/nipype/doc && make html 2>&1 | tee /scratch/builddoc.log
+set -o pipefail && cd /root/src/nipype/doc && make html 2>&1 | tee /scratch/builddocs.log
 cp -r /root/src/nipype/doc/_build/html/* /scratch/docs/
 chmod 777 -R /scratch/docs
-chmod 777 /scratch/builddoc.log
-cat /scratch/builddoc.log && if grep -q "ERROR" /scratch/builddoc.log; then false; else true; fi
+chmod 777 /scratch/builddocs.log
+cat /scratch/builddocs.log && if grep -q "ERROR" /scratch/builddocs.log; then false; else true; fi

docker/circleci/teardown.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+#
+# This script puts all artifacts in place after the smoke tests
+#
+#
+set -u
+set -e
+
+mkdir -p ${CIRCLE_TEST_REPORTS}/nose
+sudo mv ~/scratch/nosetests.xml ${CIRCLE_TEST_REPORTS}/nose/${CIRCLE_PROJECT_REPONAME}.xml
+mkdir -p ~/docs
+sudo mv ~/scratch/docs/* ~/docs/
+sudo mv ~/scratch/builddocs.log ~/docs/log.txt

examples/fmri_spm_nested.py

@@ -106,7 +106,7 @@
 """
 
 normalize = pe.Node(interface=spm.Normalize(), name="normalize")
-normalize.inputs.template = os.path.abspath('data/T1.nii')
+normalize.inputs.template = os.path.abspath('nipype-tutorial/data/T1.nii')
 
 
 """Smooth the functional data using