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lines changed Original file line number Diff line number Diff line change 1313def create_skullstripped_recon_flow (name = "skullstripped_recon_all" ):
1414 """Performs recon-all on voulmes that are already skull stripped.
1515 FreeSurfer failes to perform skullstrippig on some volumes (especially
16- MP2RAGE). This can be avoided by doing skullstripping before runnig recon-all
17- (using for example SPECTRE algorithm)
16+ MP2RAGE). This can be avoided by doing skullstripping before running
17+ recon-all (using for example SPECTRE algorithm).
1818
1919 Example
2020 -------
@@ -107,7 +107,7 @@ def create_reconall_workflow(name="ReconAll", plugin_args=None):
107107 inputspec.cw256 : Conform inputs to 256 FOV (optional)
108108 inputspec.num_threads: Number of threads on nodes that utilize OpenMP (default=1)
109109 plugin_args : Dictionary of plugin args to set to nodes that utilize OpenMP (optional)
110- Outpus ::
110+ Outputs ::
111111 postdatasink_outputspec.subject_id : name of the datasinked output folder in the subjects directory
112112
113113 Note:
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