added no dep install version. we'll be testing on both.

Author: chrisgorgo

.travis.yml

@@ -4,12 +4,21 @@ language: python
 python:
   - 2.6
   - 2.7
+env:
+  - INSTALL_DEB_DEPENDECIES=true
+  - INSTALL_DEB_DEPENDECIES=false
 # Setup anaconda
 before_install:
   - if [ ${TRAVIS_PYTHON_VERSION:0:1} == "2" ]; then wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh; else wget http://repo.continuum.io/miniconda/Miniconda3-3.6.0-Linux-x86_64.sh -O miniconda.sh; fi
   - chmod +x miniconda.sh
   - ./miniconda.sh -b
   - export PATH=/home/travis/miniconda/bin:$PATH
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; sudo rm -rf /dev/shm; fi
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; sudo ln -s /run/shm /dev/shm; fi
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh); fi
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; travis_retry sudo apt-get install -qq --no-install-recommends fsl afni elastix; fi
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; travis_retry sudo apt-get install -qq fsl-atlases; fi
+  - if [ ${INSTALL_DEB_DEPENDECIES} ]; source /etc/fsl/fsl.sh; fi
 
 # Install packages
 install: