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nipype/interfaces/robex/preprocess.py

Lines changed: 22 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -6,18 +6,32 @@
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CommandLineInputSpec,
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CommandLine,
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File,
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traits, isdefined
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traits,
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isdefined,
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)
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from nipype.utils.filemanip import split_filename
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class RobexInputSpec(CommandLineInputSpec):
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in_file = File(desc="Input volume", exists=True,
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mandatory=True, position=0, argstr="%s")
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out_file = File(desc="Output volume", position=1, argstr="%s",
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hash_files=False, name_template='%s_brain', keep_extension=True)
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out_mask = File(desc="Output mask", position=2, argstr="%s",
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hash_files=False, name_template='%s_brainmask', keep_extension=True)
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in_file = File(
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desc="Input volume", exists=True, mandatory=True, position=0, argstr="%s"
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)
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out_file = File(
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desc="Output volume",
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position=1,
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argstr="%s",
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hash_files=False,
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name_template='%s_brain',
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keep_extension=True,
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)
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out_mask = File(
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desc="Output mask",
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position=2,
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argstr="%s",
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hash_files=False,
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name_template='%s_brainmask',
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keep_extension=True,
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)
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seed = traits.Int(desc="Seed for random number generator", position=3, argstr="%i")
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@@ -37,7 +51,7 @@ class RobexSegment(CommandLine):
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The method ROBEX is based on was published in IEEE Transactions on Medical Imaging;
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please visit the website http://www.jeiglesias.com to download the paper.
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Examples
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Examples
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--------
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>>> path_mr = 'structural.nii'
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>>> robex = RobexSegment(in_file=path_mr)

nipype/interfaces/robex/tests/__init__.py

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