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lines changed Original file line number Diff line number Diff line change 2525
2626 git clone https://github.com/nipy/nipype.git
2727
28+ Check out the list of nipype's `current dependencies <https://github.com/nipy/nipype/blob/master/requirements.txt >`_.
29+
2830Install
2931-------
3032
3133The installation process is similar to other Python packages.
3234
33- If you already have a Python environment setup that has the dependencies listed
34- below, you can do::
35+ If you already have a Python environment set up, you can do::
3536
3637 easy_install nipype
3738
@@ -78,6 +79,10 @@ you can also test with nosetests::
7879
7980 nosetests --with-doctest <installation filepath>/nipype --exclude=external --exclude=testing
8081
82+ or::
83+
84+ nosetests --with-doctest nipype
85+
8186A successful test run should complete in a few minutes and end with
8287something like::
8388
@@ -108,38 +113,9 @@ On unix systems, set an empty environment variable::
108113
109114This will skip any tests that require matlab.
110115
111- Dependencies
116+ Recommended Software
112117------------
113118
114- Below is a list of required dependencies, along with additional software
115- recommendations.
116-
117- Must Have
118- ~~~~~~~~~
119-
120- .. note ::
121-
122- Full distributions of Nipype, such as the ones in Anaconda _ or Canopy _, provide
123- the following packages automatically.
124-
125- Nibabel _ 1.0 - 1.4
126- Neuroimaging file i/o library.
127-
128- Python _ 2.7 or Python _ 3
129-
130- NetworkX _ 1.0 - 1.8
131- Python package for working with complex networks.
132-
133- NumPy _ 1.3 - 1.7
134-
135- SciPy _ 0.7 - 0.12
136- Numpy and Scipy are high-level, optimized scientific computing libraries.
137-
138- Enthought _ Traits _ 4.0.0 - 4.3.0
139-
140- Dateutil 1.5 -
141-
142-
143119Strong Recommendations
144120~~~~~~~~~~~~~~~~~~~~~~
145121
Original file line number Diff line number Diff line change @@ -59,11 +59,11 @@ Checklist for analysis tutorials
5959For the analysis tutorials, we will be using a slightly modified version of the
6060FBIRN Phase I travelling data set.
6161
62- # Download and extract the `Pipeline tutorial data (429MB).
62+ 1. Download and extract the `Pipeline tutorial data (429MB).
6363<https://figshare.com/articles/nipype_tutorial_data/3395806> `_
6464(md5: d175083784c5167de4ea11b43b37c166)
6565
66- # Ensure that all programs are available by calling ``bet ``, ``matlab ``
66+ 2. Ensure that all programs are available by calling ``bet ``, ``matlab ``
6767and then ``which spm `` within matlab to ensure you have spm5/8/12 in your
6868matlab path.
6969
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