Remove out_file if x1d_stop set to True

Author: mvdoc

nipype/interfaces/afni/model.py

@@ -295,7 +295,11 @@ def _list_outputs(self):
 
         outputs['reml_script'] = self._gen_fname(
             suffix='.REML_cmd', **_gen_fname_opts)
-        outputs['out_file'] = os.path.abspath(self.inputs.out_file)
+        # remove out_file from outputs if x1d_stop set to True
+        if self.inputs.x1D_stop:
+            del outputs['out_file']
+        else:
+            outputs['out_file'] = os.path.abspath(self.inputs.out_file)
 
         return outputs
 

nipype/interfaces/afni/tests/test_deconvolve.py

@@ -0,0 +1,10 @@
+"""Test afni deconvolve"""
+
+from ..model import Deconvolve
+
+def test_x1dstop():
+    deconv = Deconvolve()
+    deconv.inputs.out_file = 'file.nii'
+    assert 'out_file' in deconv._list_outputs()
+    deconv.inputs.x1D_stop = True
+    assert not 'out_file' in deconv._list_outputs()