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update Dockerfile #56

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sfarrens wants to merge 1 commit into from
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update Dockerfile #56

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1 change: 1 addition & 0 deletions .dockerignore
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Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
.dockerignore
.git
Dockerfile
28 changes: 15 additions & 13 deletions Dockerfile
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Expand Up @@ -10,47 +10,49 @@ ARG CC=gcc-9
ARG CXX=g++-9

RUN apt-get update && \
apt-get install -y autoconf automake libtool pkg-config libgl1-mesa-glx && \
apt-get install -y autoconf automake libtool pkg-config && \
apt-get install -y gcc-9 g++-9 && \
apt-get install -y cmake git wget && \
apt-get install -y libarmadillo-dev && \
apt-get install -y libcfitsio-dev && \
apt-get install -y libfftw3-dev && \
apt-get install -y libgl1 && \
apt-get install -y libgsl-dev && \
apt-get install -y libsharp-dev && \
apt-get install -y libhealpix-cxx-dev && \
apt-get install -y healpy-data && \
apt-get install -y python3 python3-pip python3-venv && \
apt-get clean

RUN wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.1.0.tar.gz && \
RUN cd /home && \
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.1.0.tar.gz && \
tar -xvf v3.1.0.tar.gz && \
cd Catch2-3.1.0 && \
cmake -Bbuild -H. -DBUILD_TESTING=OFF && \
cmake --build build/ --target install

ENV HEALPIX /usr/share/healpy

RUN wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /miniconda && \
rm Miniconda3-latest-Linux-x86_64.sh

ENV PATH /miniconda/bin:${PATH}

RUN conda create -n sparse2d python=3.10 pip -y
RUN python3 -m venv /venv

ENV PATH /miniconda/envs/sparse2d/bin:${PATH}
RUN source /venv/bin/activate && \
pip install --upgrade pip

RUN pip install pybind11 jupyter
RUN source /venv/bin/activate && \
pip install jupyter

COPY . /home

RUN cd /home && \
RUN source /venv/bin/activate && \
cd /home && \
mkdir build && \
cd build && \
cmake .. && \
make && \
make -j8 && \
make install

ENV PYTHONPATH /home/build/src

RUN echo "source /venv/bin/activate" >> ~/.bashrc

RUN echo -e '#!/bin/bash\njupyter notebook --port=8888 --no-browser --ip=0.0.0.0 --allow-root' > /usr/bin/notebook && chmod +x /usr/bin/notebook
3 changes: 3 additions & 0 deletions README.md
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Expand Up @@ -20,6 +20,9 @@ docker pull ghcr.io/cosmostat/sparse2d:master

No further installation is required.

> Note that you will need to [log in](https://docs.docker.com/reference/cli/docker/login/) to the GitHub Container Registry.
> `docker login ghcr.io`

### Run a Docker container

To run a container on data in your current working directory, simply run:
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