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update Dockerfile and Catch2 #57

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Merged
sfarrens merged 9 commits into from
Apr 8, 2025
Merged

update Dockerfile and Catch2 #57

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64d17f4
Update ci-build.yml
ChaitanyaChawak Mar 17, 2025
cda2c2e
Update ci-build.yml
ChaitanyaChawak Mar 17, 2025
ee3d0d4
Update ci-build.yml
ChaitanyaChawak Mar 17, 2025
02d741a
Update Dockerfile
ChaitanyaChawak Mar 18, 2025
c54ed43
Merge pull request #1 from ChaitanyaChawak/deployment-fix
ChaitanyaChawak Mar 18, 2025
73e5714
Update Dockerfile
ChaitanyaChawak Mar 18, 2025
005632c
update Dockerfile
ChaitanyaChawak Mar 19, 2025
bc33548
Merge pull request #2 from ChaitanyaChawak/deployment-fix
ChaitanyaChawak Mar 20, 2025
28701ef
Update Dockerfile
sfarrens Apr 8, 2025
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1 change: 1 addition & 0 deletions .dockerignore
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Original file line number Diff line number Diff line change
@@ -1,2 +1,3 @@
.dockerignore
.git
Dockerfile
14 changes: 8 additions & 6 deletions .github/workflows/ci-build.yml
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Expand Up @@ -41,16 +41,17 @@ jobs:
if: runner.os == 'Linux'
run: |
sudo apt-get update
sudo apt-get install -y build-essential
sudo apt-get install -y libcfitsio-dev
sudo apt-get install -y libfftw3-dev
sudo apt-get install -y libarmadillo-dev
sudo apt-get install -y libgsl-dev
sudo apt-get install -y libsharp-dev
sudo apt-get install -y libhealpix-cxx-dev
sudo apt-get install -y healpy-data
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.1.0.tar.gz
tar -xvf v3.1.0.tar.gz
cd Catch2-3.1.0
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.8.0.tar.gz
tar -xvf v3.8.0.tar.gz
cd Catch2-3.8.0
cmake -Bbuild -H. -DBUILD_TESTING=OFF
sudo cmake --build build/ --target install
cd
Expand Down Expand Up @@ -99,12 +100,13 @@ jobs:
- name: Install Linux Dependencies
run: |
sudo apt-get update
sudo apt-get install -y build-essential
sudo apt-get install -y libcfitsio-dev
sudo apt-get install -y python3
sudo apt-get install -y python3-pip
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.1.0.tar.gz
tar -xvf v3.1.0.tar.gz
cd Catch2-3.1.0
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.8.0.tar.gz
tar -xvf v3.8.0.tar.gz
cd Catch2-3.8.0
cmake -Bbuild -H. -DBUILD_TESTING=OFF
sudo cmake --build build/ --target install
cd
Expand Down
37 changes: 19 additions & 18 deletions Dockerfile
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Expand Up @@ -6,12 +6,12 @@ SHELL ["/bin/bash", "-c"]
WORKDIR /workdir

ARG DEBIAN_FRONTEND=noninteractive
ARG CC=gcc-9
ARG CXX=g++-9
ARG CC=gcc-13
ARG CXX=g++-13

RUN apt-get update && \
apt-get install -y autoconf automake libtool pkg-config libgl1-mesa-glx && \
apt-get install -y gcc-9 g++-9 && \
apt-get install -y autoconf automake libtool pkg-config libgl1 libglx-mesa0 && \
apt-get install -y gcc-13 g++-13 && \
apt-get install -y cmake git wget && \
apt-get install -y libarmadillo-dev && \
apt-get install -y libcfitsio-dev && \
Expand All @@ -20,37 +20,38 @@ RUN apt-get update && \
apt-get install -y libsharp-dev && \
apt-get install -y libhealpix-cxx-dev && \
apt-get install -y healpy-data && \
apt-get install -y python3 python3-pip python3-venv && \
apt-get clean

RUN wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.1.0.tar.gz && \
tar -xvf v3.1.0.tar.gz && \
cd Catch2-3.1.0 && \
RUN cd /home && \
wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.8.0.tar.gz && \
tar -xvf v3.8.0.tar.gz && \
cd Catch2-3.8.0 && \
cmake -Bbuild -H. -DBUILD_TESTING=OFF && \
cmake --build build/ --target install

ENV HEALPIX /usr/share/healpy

RUN wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /miniconda && \
rm Miniconda3-latest-Linux-x86_64.sh

ENV PATH /miniconda/bin:${PATH}

RUN conda create -n sparse2d python=3.10 pip -y
RUN python3 -m venv /venv

ENV PATH /miniconda/envs/sparse2d/bin:${PATH}
RUN source /venv/bin/activate && \
pip install --upgrade pip

RUN pip install pybind11 jupyter
RUN source /venv/bin/activate && \
pip install jupyter

COPY . /home

RUN cd /home && \
RUN source /venv/bin/activate && \
cd /home && \
mkdir build && \
cd build && \
cmake .. && \
make && \
make -j8 && \
make install

ENV PYTHONPATH /home/build/src

RUN echo "source /venv/bin/activate" >> ~/.bashrc

RUN echo -e '#!/bin/bash\njupyter notebook --port=8888 --no-browser --ip=0.0.0.0 --allow-root' > /usr/bin/notebook && chmod +x /usr/bin/notebook
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