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@bhaller bhaller commented Jul 2, 2025

This branch is the long-term branch for changes to implement multiple phenotypic traits in SLiM; it will likely become SLiM 5.1 or SLiM 6.0. It is is active development, and will often not build; it is not recommended for end users until further notice.

bhaller added 30 commits July 1, 2025 18:35
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codecov bot commented Dec 21, 2025

Codecov Report

❌ Patch coverage is 78.34236% with 520 lines in your changes missing coverage. Please review.
✅ Project coverage is 75.89%. Comparing base (b76a8d7) to head (3084dd9).
⚠️ Report is 1 commits behind head on master.

Files with missing lines Patch % Lines
core/mutation.cpp 70.79% 158 Missing ⚠️
core/substitution.cpp 64.05% 55 Missing ⚠️
core/haplosome.cpp 58.26% 48 Missing ⚠️
core/mutation_block.cpp 42.85% 48 Missing ⚠️
core/species.cpp 72.79% 37 Missing ⚠️
core/polymorphism.cpp 42.85% 32 Missing ⚠️
core/species_eidos.cpp 86.60% 30 Missing ⚠️
core/population.cpp 78.88% 19 Missing ⚠️
core/trait.cpp 84.80% 19 Missing ⚠️
core/subpopulation.cpp 76.92% 15 Missing ⚠️
... and 17 more
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #531      +/-   ##
==========================================
+ Coverage   75.44%   75.89%   +0.45%     
==========================================
  Files         114      116       +2     
  Lines       72405    73737    +1332     
  Branches    12803    13047     +244     
==========================================
+ Hits        54624    55963    +1339     
+ Misses      17781    17774       -7     
Files with missing lines Coverage Δ
core/chromosome.h 48.48% <ø> (ø)
core/community.h 100.00% <ø> (ø)
core/community_eidos.cpp 91.43% <100.00%> (+0.13%) ⬆️
core/genomic_element.h 100.00% <ø> (ø)
core/genomic_element_type.h 100.00% <ø> (ø)
core/individual.cpp 45.07% <ø> (-3.30%) ⬇️
core/individual.h 32.75% <ø> (ø)
core/interaction_type.h 90.32% <ø> (ø)
core/mutation.h 75.00% <ø> (-8.34%) ⬇️
core/mutation_type.h 100.00% <100.00%> (ø)
... and 52 more

... and 6 files with indirect coverage changes

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2 participants