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Refactor to use fewer db calls #110

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Merged
aanil merged 1 commit into from
Mar 24, 2025
Merged

Refactor to use fewer db calls #110

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9 changes: 6 additions & 3 deletions upload_biomek_logs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -73,17 +73,20 @@ def main(args):
inst_id = conf["inst_id"]
biomek_logs_db = couch['biomek_logs']
db_view_run_finished = biomek_logs_db.view('names/run_finished')
run_finished_dict = {}
for row in db_view_run_finished:
run_finished_dict[(row.key[0], row.key[1])] = (row.value, row.id)

log_files_list = os.listdir(args.log_file_path)
logs_to_create = []
logs_to_update = []
save_docs = []
for fname in log_files_list:
if fname.startswith("Errors"):
if (not db_view_run_finished[[fname, inst_id]]):
if ((fname, inst_id) not in run_finished_dict):
logs_to_create.append(fname)
elif (db_view_run_finished[[fname, inst_id]].rows[0].value == False):
logs_to_update.append(db_view_run_finished[[fname, inst_id]].rows[0].id)
elif (run_finished_dict[(fname, inst_id)][0] == False):
logs_to_update.append(run_finished_dict[(fname, inst_id)][1])


for fname in logs_to_create:
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