PathoGenOmics Lab
An interdisciplinary research group dedicated to unraveling the complexities of microbial pathogens and their relationships with hosts.
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- afwdist Public
A lightweight tool to calculate a pairwise distance metric based on fixed and non-fixed allele frequencies
PathoGenOmics-Lab/afwdist’s past year of commit activity - transcluster Public
A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index
PathoGenOmics-Lab/transcluster’s past year of commit activity - ena-spike-ntd-repdel-analysis Public
A Snakemake workflow with associated scripts used for detecting spike NTD repaired deletions in SARS-CoV-2 Omicron BA.1 lineage reads. Manuscript under review.
PathoGenOmics-Lab/ena-spike-ntd-repdel-analysis’s past year of commit activity - get_MNV Public
Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads
PathoGenOmics-Lab/get_MNV’s past year of commit activity
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