updates to template files

.github/pull_request_template.md

@@ -23,12 +23,11 @@
 ## Checklist ✅
 
 - [ ] I have run and tested my changes locally
-- [ ] I have limit this PR to less than 1000 lines of code change (if not, explain why)
+- [ ] I have limited this PR to less than 1000 lines of code change (if not, explain why)
 - [ ] I have updated/added tests to cover my changes (if applicable)
 - [ ] I have updated/added requirements to cover my changes (if applicable)
 - [ ] I have run linting and formatting on any code changes (if applicable)
 - [ ] I have updated the documentation (README, etc.) accordingly
-- [ ] I have reviewed and resolved any merge conflict
 
 ## Reviewer Emoji Legend
 

.github/workflows/pre-commit.yml

@@ -10,5 +10,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
+      - name: Install uv and set the python version
+        uses: astral-sh/setup-uv@v6
+        with:
+          python-version: '3.12'
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
+      - name: Sync uv
+        run: uv sync --locked --all-extras --dev
       - uses: pre-commit/action@v3.0.1

.pre-commit-config.yaml

@@ -1,38 +1,38 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
       - id: check-yaml
-        stages: [commit]
+        stages: [pre-commit]
       - id: check-json
-        stages: [commit]
+        stages: [pre-commit]
         exclude: ^\.devcontainer/devcontainer\.json$
       - id: check-toml
-        stages: [commit]
+        stages: [pre-commit]
       - id: check-merge-conflict
-        stages: [commit]
+        stages: [pre-commit]
 
   - repo: https://github.com/abravalheri/validate-pyproject
-    rev: v0.19
+    rev: v0.24.1
     hooks:
       - id: validate-pyproject
 
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.4.1
+    hooks:
+      - id: codespell
+
   - repo: https://github.com/igorshubovych/markdownlint-cli
-    rev: v0.41.0
+    rev: v0.45.0
     hooks:
       - id: markdownlint-fix
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.4
+    rev: v0.12.2
     hooks:
-      - id: ruff-format
-        types_or: [python, pyi, jupyter]
-      - id: ruff
+      - id: ruff-check
         args: [--fix, --exit-non-zero-on-fix]
         types_or: [python, pyi, jupyter]
         require_serial: true
-
-  - repo: https://github.com/crate-ci/typos
-    rev: v1.24.5
-    hooks:
-      - id: typos
+      - id: ruff-format
+        types_or: [python, pyi, jupyter]

.vscode/extensions.json

@@ -1,10 +1,14 @@
 {
     "recommendations": [
         "ms-python.python",
-        "charliermarsh.ruff",
         "ms-toolsai.jupyter",
+        "ms-python.vscode-python-envs",
+        "charliermarsh.ruff",
         "github.vscode-pull-request-github",
         "davidanson.vscode-markdownlint",
-        "donjayamanne.python-environment-manager"
+        "quarto.quarto",
+        "skellock.just",
+        "yzhang.markdown-all-in-one",
+        "redhat.vscode-yaml"
     ]
 }

Justfile

@@ -14,7 +14,6 @@ system-info:
     @echo "CPU architecture: {{ arch() }}"
     @echo "Operating system type: {{ os_family() }}"
     @echo "Operating system: {{ os() }}"
-    @echo "Home directory: {{ home_directory() }}"
 
 # Clean venv
 clean:
@@ -32,7 +31,7 @@ update-reqs:
 venv:
     uv sync
     uv tool install pre-commit
-    pre-commit install
+    uv run pre-commit install
 
 activate-venv:
     uv shell
@@ -85,15 +84,14 @@ pre-commit-run:
 
 [windows]
 pre-install:
-    winget install Casey.Just astral-sh.uv GitHub.cli Posit.Quarto
+    winget install Casey.Just astral-sh.uv GitHub.cli Posit.Quarto OpenJS.NodeJS
+    npm install -g markdownlint-cli
 
 [linux]
 pre-install:
-    brew install just uv gh
-    curl -sfL https://github.com/quarto-dev/quarto-cli/releases/download/v1.5.54/quarto-1.5.54-linux-amd64.deb  | sudo apt install ./quarto-1.5.54-linux-amd64.deb
-    rm quarto-1.5.54-linux-amd64.deb
+    brew install just uv gh markdownlint-cli
 
 [macos]
 pre-install:
-    brew install just uv gh
+    brew install just uv gh markdownlint-cli
     brew install --cask quarto

pyproject.toml

@@ -1,27 +1,33 @@
 [project]
-name = "dms-dashboard"
+name = "project-name"
 version = "0.1.0"
-description = "IPA Data Management System Dashboard."
+description = "Project description"
 readme = "README.md"
 requires-python = ">=3.12"
 dependencies = [
-    "mdformat>=0.7.17",
-    "mdformat-config>=0.1.3",
-    "mdformat-frontmatter>=2.0.8",
-    "mdformat-gfm>=0.3.6",
-    "mdformat-pyproject>=0.0.1",
-    "ruff>=0.6.4",
+    "duckdb>=1.1.3",
+    "great-tables>=0.15.0",
     "ipykernel>=6.29.5",
-    "jupyterlab>=4.2.5",
-    "sqlfluff>=3.1.1",
+    "jupyter>=1.1.1",
+    "jupytext>=1.17.2",
+    "pandas>=2.2.3",
+    "polars>=1.17.1",
+    "seaborn>=0.13.2",
 ]
 
 
+[tool.uv]
+dev-dependencies = [
+    "codespell>=2.4.1",
+    "pre-commit>=4.2.0",
+    "ruff>=0.7.4",
+]
+
 [tool.ruff]
 line-length = 88
 fix = true
-# Assume Python 3.11
-target-version = "py311"
+# Assume Python 3.12
+target-version = "py312"
 
 [tool.ruff.lint]
 # docs: https://docs.astral.sh/ruff/rules/
@@ -59,8 +65,7 @@ ignore = [
 docstring-code-format = true
 docstring-code-line-length = 88
 
-[tool.mdformat]
-# docs: https://mdformat.readthedocs.io/en/stable/users/configuration_file.html
-wrap = 88          # possible values: {"keep", "no", INTEGER}
-number = false     # possible values: {false, true}
-end_of_line = "lf" # possible values: {"lf", "crlf", "keep"}
+[tool.codespell]
+builtin = "clear,rare,informal,usage,code,names"
+ignore-words-list = "jupyter,ipa"
+skip = "uv.lock"