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Drop shank ids when all NaN and clean up report #390

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Merged
alejoe91 merged 1 commit into from
Dec 18, 2025
Merged

Drop shank ids when all NaN and clean up report #390

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10 changes: 6 additions & 4 deletions resources/generate_cambridgeneurotech_library.py
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Original file line number Diff line number Diff line change
Expand Up @@ -152,8 +152,9 @@ def generate_all_probes(probe_tables_path, output_folder):

if np.all(pd.isna(contacts["contact_sides"])):
contacts.drop(columns="contact_sides", inplace=True)
else:
print(f"Double sided probe: {sheet_name}")

if np.all(pd.isna(contacts["shank_ids"])):
contacts.drop(columns="shank_ids", inplace=True)

if "z" in contacts.columns:
contacts.drop(columns=["z"], inplace=True)
Expand All @@ -172,8 +173,9 @@ def generate_all_probes(probe_tables_path, output_folder):
print(f"Problem loading {sheet_name}: {e}")
sheets_with_issues.append(sheet_name)

print("Wrong contours:\n\n", wrong_contours)
print("Sheets with issues:\n\n", sheets_with_issues)
print(f"\nREPORT for CambridgeNeurotech probe library generation\n")
print(f"Probes with wrong contours: {len(wrong_contours)}\n{wrong_contours}")
print(f"Probes failed to load: {len(sheets_with_issues)}\n{sheets_with_issues}")


if __name__ == "__main__":
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