Skip to content

Conversation

@sylviamic
Copy link

These commits modify the server-side Marker Genes callback MARK to return the keys pts, pts_rest along with previously returned statistics. These keys correspond to the fraction of cells in the marked group expressing the gene, and the fraction of cells not in the marked group (_rest) that express the marker, respectively. Together these values help to quantify marker gene specificity.

These commits also change the minimum number of groups to compare from 3 to 2, the minimum supported by scanpy. 2 group comparisons are not supported by the logreg test, and associated error text has been modified to notify users when they attempt to use it for a 2 group test.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant